1/20/11 14:00
mpiexec -np 5 -host localhost,node001,node002,node003,node004 /common/clcbfxcell/blastall_cell_mpi -c cell_sw -v 1 -a 8 -b 1 -p blastx -m 8 -i /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/SockeyeSoliddenovo81952.fa -d /common/clcbfxcell/databases/swissprot.fasta > /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/SockeyeSoliddenovo81952_SP.txt
DEAD at sequence ConsensusfromContig20371
nothing weird.
going to cut everything before 20380 and try again
1/21 7:00
mpiexec -np 5 -host localhost,node001,node002,node003,node004 /common/clcbfxcell/blastall_cell_mpi -c cell_sw -v 1 -a 14 -b 1 -p blastx -m 8 -i /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/SockeyeSoliddenovoGrT20780.fa -d /common/clcbfxcell/databases/swissprot.fasta > /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/SockeyeSoliddenovoGrT20780_SP.txt
DEAD in minutes
restarted using 8 instead of 14 cpus
DEAD again
Give up
also starting up on Galaxy (megablast- nt)
notes appear as if it worked before.
megablast finished and at
maybe about 3 hours to do 80k (only nucleotide though) need to get table
ALSO trying SP blastx on Inquiry
#WIN,
SP blast worked!!
Raw data @
.resources/bigfish.jpg)
.resources/iNquiry%20Bioinformatics%20Portal.jpg)